Intervalize the mutation frequencies — intervalize_mutation

Intervalize the mutation frequencies for the subsequent analyses and plots. Adds f_interval column to the SNV tibble

Usage

intervalize_mutation_frequencies(object, ...)

# S3 method for cevodata
intervalize_mutation_frequencies(
  object,
  which_snvs = default_SNVs(object),
  column = get_frequency_measure_name(object, which_snvs),
  bins = NULL,
  verbose = get_cevomod_verbosity(),
  ...
)

# S3 method for cevo_snvs
intervalize_mutation_frequencies(
  object,
  column = get_frequency_measure_name(object),
  bins = NULL,
  verbose = get_cevomod_verbosity(),
  ...
)

Arguments

object: object
...: Other args
which_snvs: Which SNVs to use
column: Which frequency measure column to intervalize? By default, uses the CCF/2 if it is found in the SNV tibble, and VAF otherwise
bins: Number of interval bins
verbose: Verbose?

Value

object