Plot CNV heatmap
Usage
plot_CNV_heatmap(object, ...)
# S3 method for cevodata
plot_CNV_heatmap(object, meta_field, ...)
heatmap_granges(
granges,
meta_field,
row_groups = NULL,
keep_sites_present_in = floor(0.8 * length(granges)),
color_breaks = c(0, 2, 6),
colors = c("dodgerblue3", "white", "firebrick3"),
window_width = 1e+06,
upper_limit = 6,
cluster_rows = FALSE,
show_row_names = TRUE,
show_column_names = FALSE,
use_raster = TRUE,
cluster_columns = FALSE,
border = TRUE,
legend_params = NULL,
verbose = TRUE,
...
)Arguments
- object
cevodata
- ...
other arguments passed to Heatmap
- meta_field
column to plot
- granges
granges list
- row_groups
vector
- keep_sites_present_in
floor(0.8*length(granges))
- color_breaks
c(0, 2, 6)
- colors
c("dodgerblue3", "white", "firebrick3")
- window_width
window_width
- upper_limit
upper limit of color scale
- cluster_rows
FALSE
- show_row_names
TRUE
- show_column_names
FALSE
- use_raster
TRUE
- cluster_columns
FALSE
- border
TRUE
- legend_params
goes to Heatmap(heatmap_legend_param = .)
- verbose
Verbose?