Get/Add SNV/CNV data from the cevodata dataset

Usage

add_SNV_data(object, ...)

# S3 method for cevodata
add_SNV_data(object, snvs, name = NULL, ...)

add_CNV_data(object, ...)

# S3 method for cevodata
add_CNV_data(object, cnvs, name = NULL, ...)

SNVs(object, ...)

# S3 method for cevodata
SNVs(object, which = object$active_SNVs, ...)

get_SNVs_wider(object, fill_na = NULL)

CNVs(object, ...)

# S3 method for cevodata
CNVs(object, which = object$active_CNVs, ...)

Arguments

object: cevodata object
...: other arguments
snvs: tibble with SNVs
name: name for SNVs/CNVs assay
cnvs: tibble with CNVs
which: assay to use - uses active_SNVs if nonei
fill_na: fill missing with this value

Value

tibble

Functions

add_SNV_data(cevodata): Add new SNVs to cevodata
add_CNV_data(cevodata): Add new CNVs to cevodata
SNVs(cevodata): Get SNVs from cevodata dataset
get_SNVs_wider(): Get SNVs in the wide table form
CNVs(cevodata): Get CNVs from cevodata dataset