cevomod v2.3.0 released!

Starting from this update, cevomod can fit the binomial components of the model using the CliP algorithm introduced in Jiang et al., CliP: subclonal architecture reconstruction of cancer cells in DNA sequencing data using a penalized likelihood model, bioRxiv (2021).

Running CliP does not require installing anything but Apptainer (I wanted to implement methods for running external tools via containers for a long time). The CliP container image can be built with build_clip_container() and CliP can be selected with method = "CliP argument of fit_subclones() function.

set_containers_dir("~/containers/")
# get_containers_dir() to see the current containers dir
build_clip_container()
fit_subclones(cd, method = "CliP")

Check out the cevomod page and Model Fitting vignette for more details on usage of CliP in cevomod.