Cancer Evolution
cevomod - Cancer Evolutionary Models
R package for modeling cancer evolution. Inspired by MOBSTER, fits mutation frequency spectra with a mixture of power-law and binomial distributions. Unlike MOBSTER, is able to fit models to whole exome sequencing data at the cost of lower model accuracy. Still being actively developed.
readthis
A helper package for cevomod ecosystem. Provides a consistent way of reading output files from external tools such as variant callers or tumor subclonal reconstruction tools. Experimental.
Other packages
boards
Boards is an extension for the pins package. It’s goal is to keep all the boards (boards from many projects) in one place and easily find the right data. Early development.