Kuś P, Jaksik R, Kimmel M, “Tumor subclonal reconstruction pipelines - comparison of results”, Recent advances in computational oncology and personalized medicine. Vol. 1, Here and now! (2021), DOI: 10.34918/83571
Janus P., Kuś P., Vydra N., Toma-Jonik A., Stokowy T., Mrowiec K., Wojtaś B., Gielniewski B., Widłak W. HSF1 can prevent inflammation following heat shock by inhibiting the excessive activation of the ATF3 and JUN&FOS genes. Cells (2022), DOI: 10.3390/cells11162510
Kurpas M. K., Jaksik R., Kuś P., Kimmel, M. Genomic analysis of SARS-CoV-2 Alpha, Beta and Delta variants of concern uncovers signatures of neutral and non-neutral evolution. Viruses (2022), DOI: 10.3390/v14112375
Le D., Florez M. A., Kus P., Tran B., Kain B. N., Jain A., Malovannaya A., King K. Y. BATF2 promotes HSC myeloid differentiation via amplification of the pro-inflammatory response during chronic infection. Blood (2022), DOI: 10.1016/j.isci.2023.106059
Vydra N., Janus P., Kus P., Stokowy T., Mrowiec K., Toma-Jonik A., Krzywon A., Cortez A. J., Wojtas B., Gielniewski B., Jaksik R., Kimmel M., Widlak W. Heat shock factor 1 (HSF1) cooperates with estrogen receptor α (ERα) in the regulation of estrogen action in breast cancer cells. ELife (2021), DOI: 10.7554/eLife.69843
Other studies
Bondaruk J., Jaksik R., Wang Z., Cogdell D., Lee S., Chen Y., Dinh K. N., Majewski T., Zhang L., Cao S., Tian F., Yao H., Kuś P., Chen H., Weinstein J. N., Navai N., Dinney C., Gao J., Theodorescu D., Czerniak B., et al. (2022). The origin of bladder cancer from mucosal field effects. IScience, 25(7), 104551. DOI: 10.1016/j.isci.2022.104551
Hormaechea-Agulla D., Matatall K. A., Le D. T., Kain B., Long X., Kus P., Jaksik R., Challen G. A., Kimmel M., King K. Y. Chronic infection drives Dnmt3a-loss-of-function clonal hematopoiesis via IFNγ signaling. Cell Stem Cell (2021)
Conference abstracts
Kuś P., Chen H., Wei P., Czerniak B., Kimmel M., Bladder Cancer Evolution: Population genetics-based modeling of Whole-Organ Mapping Data, ECCB 2023, Lyon, France (poster)
Kuś P., Kimmel M., Investigating the Dynamics of Cancer Evolution: Variant Allele Frequency Patterns and Model Limitations, IWBBIO 2023, Gran Canaria (poster)
Kuś P., Kimmel M., Sampling-oriented modelling of cancer evolution, Gliwice Scientific Meetings 2022 (poster)
Kuś P., Jaksik R., Kimmel M., Analiza struktury klonalnej nowotworów - porównanie metod, Computational Oncology and Personalized Medicine COPM2021 Conference, (online)
Kuś P., Jaksik R., Kimmel M., Widlak, W., Genomic action of estrogen receptor α in breast cancer patients may be enhanced by Heat Shock Factor 1, The 5th Warsaw Conference on Perspectives of Molecular Oncology (2020) (online)
Kuś P., Jaksik R., Kimmel M., Measurement biases affecting RNA sequencing and methods of its normalization, Bioinformatics in Torun 2019
Kuś P., Jaksik R., Kimmel M., Influence of measurement bias on the interpretation of RNA sequencing results, qBio 2019 Conference, San Francisco, CA, US
